1 HisKA#1
260-325 aa · 66 aa · 13.1% of protein
Raw token
HisKA:260:2.14e-17:325:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY49_RS03180
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_019131055
ClassHKTypeClassicLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019131055#KSY49_RS03180Stable P2CS identifier used across views.
GenomeGCF_019131055Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 505 aa (36.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
372-490 aa · 119 aa · 23.6% of protein
Raw token
HATPase_c:372:9.85e-28:490:119:109- Raw architecture: HisKA:260:2.14e-17:325:66:64#HATPase_c:372:9.85e-28:490:119:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019131055::NZ_JAHOLN010000003.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135707-137624Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY49_03180RefSeq proteinWP_254883338.1
Context group ID
GCF_019131055::NZ_JAHOLN010000003.1::G00022Context members
KSY49_RS03175KSY49_RS03180
Partner locus tags
KSY49_RS03175KSY49_RS03180
Partner old locus tags
KSY49_03175KSY49_03180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254883338.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY49_RS03180Primary locus identifier stored in the genes table.
Old locus tagKSY49_03180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOLN010000003.1Sequence record reported by the local genomic context database.
Genomic interval136 107-137 624 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span135 707-137 624 ntGCF_019131055::NZ_JAHOLN010000003.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131055::NZ_JAHOLN010000003.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOLN010000003.1All displayed genes belong to this local TCS context.
Neighborhood span135 707-137 624 nt1 918 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 707 nt137 624 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSY49_RS03175GCF_019131055#KSY49_RS03175
RRCheY
135 707-136 081 nt · Reverse (-)
KSY49_RS03180GCF_019131055#KSY49_RS03180
HKClassicCurrent focus
136 107-137 624 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052595#KTQ91_RS07375Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1438381
Simplified PFAM architecture for HKOC_1438381
PFAM domain coverage: 184 / 508 aa (36.2%)
1 aa508 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[263-328] | HATPase_c[376-493]
- Domain count: 2
- Matched identifier: HKOC_1438381
- Positioned domains: HisKA 263-328 ; HATPase_c 376-493
Cluster members and taxonomy
Representative gene: GCF_019052595#KTQ91_RS07375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019131055
AssemblyASM1913105v1 · Contighaploid
Genome composition3 365 549 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 51 · HK 23 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key