1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000163:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSW88_RS00915
Histidine kinase, Classic
Bifidobacterium longum · GCF_019128255
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019128255#KSW88_RS00915Stable P2CS identifier used across views.
GenomeGCF_019128255Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000179:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000163:278:64:68#HATPase_c:325:0.0000000179:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019128255::NZ_JAHOGD010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154086-156091Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSW88_00915RefSeq proteinWP_217301100.1
Context group ID
GCF_019128255::NZ_JAHOGD010000001.1::G00003Context members
KSW88_RS00915KSW88_RS00920
Partner locus tags
KSW88_RS00915KSW88_RS00920
Partner old locus tags
KSW88_00915KSW88_00920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217301100.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSW88_RS00915Primary locus identifier stored in the genes table.
Old locus tagKSW88_00915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOGD010000001.1Sequence record reported by the local genomic context database.
Genomic interval154 086-155 438 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 086-156 091 ntGCF_019128255::NZ_JAHOGD010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019128255::NZ_JAHOGD010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOGD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span154 086-156 091 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 086 nt156 091 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSW88_RS00915GCF_019128255#KSW88_RS00915
HKClassicCurrent focus
154 086-155 438 nt · Forward (+)
KSW88_RS00920GCF_019128255#KSW88_RS00920
RRNarL
155 438-156 091 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052475#KTQ86_RS01770Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1967306
Simplified PFAM architecture for HKOC_1967306
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1967306
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_019052475#KTQ86_RS01770
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 6 over 6 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_019128255
AssemblyASM1912825v1 · Contighaploid
Genome composition2 461 941 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key