1 HisKA_3#1
201-265 aa · 65 aa · 15.9% of protein
Raw token
HisKA_3:201:0.0000000637:265:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSW83_RS00335
Histidine kinase, Classic
Bifidobacterium longum · GCF_019128095
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019128095#KSW83_RS00335Stable P2CS identifier used across views.
GenomeGCF_019128095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 410 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa410 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000304:392:86:109- Raw architecture: HisKA_3:201:0.0000000637:265:65:68#HATPase_c:322:0.0000304:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019128095::NZ_JAHOGC010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81383-83375Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSW83_00335RefSeq proteinWP_007056207.1
Context group ID
GCF_019128095::NZ_JAHOGC010000001.1::G00004Context members
KSW83_RS00330KSW83_RS00335
Partner locus tags
KSW83_RS00330KSW83_RS00335
Partner old locus tags
KSW83_00330KSW83_00335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007056207.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4NJF8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4NJF8_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSW83_RS00335Primary locus identifier stored in the genes table.
Old locus tagKSW83_00335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOGC010000001.1Sequence record reported by the local genomic context database.
Genomic interval82 143-83 375 nt1 233 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 383-83 375 ntGCF_019128095::NZ_JAHOGC010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019128095::NZ_JAHOGC010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOGC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span81 383-83 375 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 383 nt83 375 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSW83_RS00330GCF_019128095#KSW83_RS00330
RRNarL
81 383-82 108 nt · Reverse (-)
KSW83_RS00335GCF_019128095#KSW83_RS00335
HKClassicCurrent focus
82 143-83 375 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007525#BL_RS01280Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2354149
Simplified PFAM architecture for HKOC_2354149
PFAM domain coverage: 69 / 410 aa (16.8%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-268]
- Domain count: 1
- Matched identifier: HKOC_2354149
- Positioned domains: HisKA_3 200-268
Cluster members and taxonomy
Representative gene: GCF_000007525#BL_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_019128095
AssemblyASM1912809v1 · Contighaploid
Genome composition2 475 801 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key