1 Response_reg#1
9-133 aa · 125 aa · 50.2% of protein
Raw token
Response_reg:9:7.67e-29:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSW30_RS05555
Response regulator NarL family
Bifidobacterium adolescentis · GCF_019127775
ClassRRTypeNarLLength249 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019127775#KSW30_RS05555Stable P2CS identifier used across views.
GenomeGCF_019127775Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 249 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
186-243 aa · 58 aa · 23.3% of protein
Raw token
HTH_LUXR:186:2.09e-23:243:58:58- Raw architecture: Response_reg:9:7.67e-29:133:125:111#HTH_LUXR:186:2.09e-23:243:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019127775::NZ_JAHOFH010000003.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34614-38049Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSW30_05555RefSeq proteinWP_217717055.1
Context group ID
GCF_019127775::NZ_JAHOFH010000003.1::G00008Context members
KSW30_RS05550KSW30_RS05555
Partner locus tags
KSW30_RS05550KSW30_RS05555
Partner old locus tags
KSW30_05550KSW30_05555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217717055.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSW30_RS05555Primary locus identifier stored in the genes table.
Old locus tagKSW30_05555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOFH010000003.1Sequence record reported by the local genomic context database.
Genomic interval37 300-38 049 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 614-38 049 ntGCF_019127775::NZ_JAHOFH010000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019127775::NZ_JAHOFH010000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOFH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span34 614-38 049 nt3 436 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 614 nt38 049 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSW30_RS05550GCF_019127775#KSW30_RS05550
HKClassic
34 614-37 223 nt · Forward (+)
KSW30_RS05555GCF_019127775#KSW30_RS05555
RRNarLCurrent focus
37 300-38 049 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019127775#KSW30_RS05555The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0737049
Simplified PFAM architecture for RROC_0737049
PFAM domain coverage: 180 / 249 aa (72.3%)
1 aa249 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[188-243]
- Domain count: 2
- Matched identifier: RROC_0737049
- Positioned domains: Response_reg 9-132 ; GerE 188-243
Cluster members and taxonomy
Representative gene: GCF_019127775#KSW30_RS05555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_019127775
AssemblyASM1912777v1 · Contighaploid
Genome composition2 163 657 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 12 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key