1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.00000000000000947:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSW03_RS07855
Histidine kinase, Classic
Bifidobacterium breve · GCF_019126785
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019126785#KSW03_RS07855Stable P2CS identifier used across views.
GenomeGCF_019126785Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 451 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.00000000323:443:120:109- Raw architecture: HisKA_3:215:0.00000000000000947:278:64:68#HATPase_c:325:0.00000000323:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019126785::NZ_JAHODT010000020.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12749-14754Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSW03_07850RefSeq proteinWP_217297509.1
Context group ID
GCF_019126785::NZ_JAHODT010000020.1::G00009Context members
KSW03_RS07850KSW03_RS07855
Partner locus tags
KSW03_RS07850KSW03_RS07855
Partner old locus tags
KSW03_07845KSW03_07850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_217297509.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4TWN5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4TWN5_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSW03_RS07855Primary locus identifier stored in the genes table.
Old locus tagKSW03_07850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHODT010000020.1Sequence record reported by the local genomic context database.
Genomic interval13 399-14 754 nt1 356 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 749-14 754 ntGCF_019126785::NZ_JAHODT010000020.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019126785::NZ_JAHODT010000020.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHODT010000020.1All displayed genes belong to this local TCS context.
Neighborhood span12 749-14 754 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 749 nt14 754 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSW03_RS07850GCF_019126785#KSW03_RS07850
RRNarL
12 749-13 402 nt · Reverse (-)
KSW03_RS07855GCF_019126785#KSW03_RS07855
HKClassicCurrent focus
13 399-14 754 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052255#KTQ82_RS07860Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1955334
Simplified PFAM architecture for HKOC_1955334
PFAM domain coverage: 66 / 451 aa (14.6%)
1 aa451 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1955334
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_019052255#KTQ82_RS07860
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 41 over 41 total members. Page 1 / 1.
GCF_019052255#KTQ82_RS07860 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_019126785
AssemblyASM1912678v1 · Contighaploid
Genome composition2 354 860 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 8 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key