1 Response_reg#1
15-89 aa · 75 aa · 35.0% of protein
Raw token
Response_reg:15:0.000000000853:89:79:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU62_RS18910
Response regulator LytTR family
Thomasclavelia ramosa · GCF_019126335
ClassRRTypeLytTRLength214 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019126335#KSU62_RS18910Stable P2CS identifier used across views.
GenomeGCF_019126335Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 214 aa (73.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 LytTR#2
116-197 aa · 82 aa · 38.3% of protein
Raw token
LytTR:116:2.44e-19:197:88:98- Raw architecture: Response_reg:15:0.000000000853:89:79:111#LytTR:116:2.44e-19:197:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019126335::NZ_JAHOCC010000018.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span41260-41904Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU62_09585RefSeq proteinWP_226817390.1
Context group ID
GCF_019126335::NZ_JAHOCC010000018.1::G00009Context members
KSU62_RS18910
Partner locus tags
KSU62_RS18910
Partner old locus tags
KSU62_09585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226817390.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU62_RS18910Primary locus identifier stored in the genes table.
Old locus tagKSU62_09585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOCC010000018.1Sequence record reported by the local genomic context database.
Genomic interval41 260-41 904 nt645 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 260-41 904 ntGCF_019126335::NZ_JAHOCC010000018.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019126335::NZ_JAHOCC010000018.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOCC010000018.1All displayed genes belong to this local TCS context.
Neighborhood span41 260-41 904 nt645 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 260 nt41 904 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSU62_RS18910GCF_019126335#KSU62_RS18910
RRLytTRCurrent focus
41 260-41 904 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019125255#KSU56_RS18855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1947142
Simplified PFAM architecture for RROC_1947142
PFAM domain coverage: 150 / 214 aa (70.1%)
1 aa214 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[22-89] | LytTR[117-198]
- Domain count: 2
- Matched identifier: RROC_1947142
- Positioned domains: Response_reg 22-89 ; LytTR 117-198
Cluster members and taxonomy
Representative gene: GCF_019125255#KSU56_RS18855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019126335
AssemblyASM1912633v1 · Contighaploid
Genome composition3 712 480 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 25 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key