1 Response_reg#1
4-108 aa · 105 aa · 45.1% of protein
Raw token
Response_reg:4:8.6e-19:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU26_RS02625
Response regulator LytTR family
Bifidobacterium breve · GCF_019126325
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019126325#KSU26_RS02625Stable P2CS identifier used across views.
GenomeGCF_019126325Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-227 aa · 82 aa · 35.2% of protein
Raw token
LytTR:146:0.00000000000000105:227:88:98- Raw architecture: Response_reg:4:8.6e-19:108:108:111#LytTR:146:0.00000000000000105:227:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019126325::NZ_JAHOCF010000004.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span56680-57381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU26_02625RefSeq proteinWP_217296714.1
Context group ID
GCF_019126325::NZ_JAHOCF010000004.1::G00013Context members
KSU26_RS02625
Partner locus tags
KSU26_RS02625
Partner old locus tags
KSU26_02625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_217296714.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4TVV5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4TVV5_BIFBRDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU26_RS02625Primary locus identifier stored in the genes table.
Old locus tagKSU26_02625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOCF010000004.1Sequence record reported by the local genomic context database.
Genomic interval56 680-57 381 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56 680-57 381 ntGCF_019126325::NZ_JAHOCF010000004.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019126325::NZ_JAHOCF010000004.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOCF010000004.1All displayed genes belong to this local TCS context.
Neighborhood span56 680-57 381 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 680 nt57 381 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSU26_RS02625GCF_019126325#KSU26_RS02625
RRLytTRCurrent focus
56 680-57 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052255#KTQ82_RS02625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1099309
Simplified PFAM architecture for RROC_1099309
PFAM domain coverage: 191 / 233 aa (82.0%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[142-227]
- Domain count: 2
- Matched identifier: RROC_1099309
- Positioned domains: Response_reg 4-108 ; LytTR 142-227
Cluster members and taxonomy
Representative gene: GCF_019052255#KTQ82_RS02625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_019126325
AssemblyASM1912632v1 · Contighaploid
Genome composition2 350 248 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 8 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key