1 Response_reg#1
4-114 aa · 111 aa · 69.8% of protein
Raw token
Response_reg:4:1.32e-25:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU32_RS00645
Response regulator, CheY family
Bifidobacterium breve · GCF_019125915
ClassRRTypeCheYLength159 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019125915#KSU32_RS00645Stable P2CS identifier used across views.
GenomeGCF_019125915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length159 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 159 aa (69.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa159 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.32e-25:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019125915::NZ_JAHOCQ010000001.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span152350-152829Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU32_00645RefSeq proteinWP_171842469.1
Context group ID
GCF_019125915::NZ_JAHOCQ010000001.1::G00008Context members
KSU32_RS00645
Partner locus tags
KSU32_RS00645
Partner old locus tags
KSU32_00645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_171842469.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4TYC0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4TYC0_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU32_RS00645Primary locus identifier stored in the genes table.
Old locus tagKSU32_00645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOCQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval152 350-152 829 nt480 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span152 350-152 829 ntGCF_019125915::NZ_JAHOCQ010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125915::NZ_JAHOCQ010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOCQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span152 350-152 829 nt480 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 350 nt152 829 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSU32_RS00645GCF_019125915#KSU32_RS00645
RRCheYCurrent focus
152 350-152 829 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001264105#BBM1340_RS05380Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2209252
Simplified PFAM architecture for RROC_2209252
PFAM domain coverage: 110 / 159 aa (69.2%)
1 aa159 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-113]
- Domain count: 1
- Matched identifier: RROC_2209252
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113
Cluster members and taxonomy
Representative gene: GCF_001264105#BBM1340_RS05380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_019125915
AssemblyASM1912591v1 · Contighaploid
Genome composition2 349 988 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 8 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key