1 Response_reg#1
4-103 aa · 100 aa · 42.7% of protein
Raw token
Response_reg:4:0.00000000000356:103:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU59_RS00415
Response regulator LytTR family
Thomasclavelia ramosa · GCF_019125835
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019125835#KSU59_RS00415Stable P2CS identifier used across views.
GenomeGCF_019125835Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-221 aa · 88 aa · 37.6% of protein
Raw token
LytTR:134:0.00000000014:221:93:98- Raw architecture: Response_reg:4:0.00000000000356:103:106:111#LytTR:134:0.00000000014:221:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019125835::NZ_JAHOBY010000001.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span71328-72032Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU59_00420RefSeq proteinWP_003536945.1
Context group ID
GCF_019125835::NZ_JAHOBY010000001.1::G00013Context members
KSU59_RS00415
Partner locus tags
KSU59_RS00415
Partner old locus tags
KSU59_00420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003536945.1Primary protein accession used for annex mappings.
UniProt accessionB0N4G0Primary UniProt accession resolved in the annex database.
UniProt IDB0N4G0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU59_RS00415Primary locus identifier stored in the genes table.
Old locus tagKSU59_00420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOBY010000001.1Sequence record reported by the local genomic context database.
Genomic interval71 328-72 032 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 328-72 032 ntGCF_019125835::NZ_JAHOBY010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125835::NZ_JAHOBY010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOBY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span71 328-72 032 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 328 nt72 032 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSU59_RS00415GCF_019125835#KSU59_RS00415
RRLytTRCurrent focus
71 328-72 032 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS07315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047407
Simplified PFAM architecture for RROC_1047407
PFAM domain coverage: 195 / 234 aa (83.3%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[136-221]
- Domain count: 2
- Matched identifier: RROC_1047407
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 136-221 ; LytTR 136-221
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS07315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019125835
AssemblyASM1912583v1 · Contighaploid
Genome composition3 774 081 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 52 · HK 24 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key