1 Response_reg#1
16-90 aa · 75 aa · 34.9% of protein
Raw token
Response_reg:16:0.00000000103:90:79:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU50_RS18905
Response regulator LytTR family
Thomasclavelia ramosa · GCF_019125825
ClassRRTypeLytTRLength215 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019125825#KSU50_RS18905Stable P2CS identifier used across views.
GenomeGCF_019125825Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 215 aa (73.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 LytTR#2
117-198 aa · 82 aa · 38.1% of protein
Raw token
LytTR:117:2.88e-19:198:88:98- Raw architecture: Response_reg:16:0.00000000103:90:79:111#LytTR:117:2.88e-19:198:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019125825::NZ_JAHOBL010000018.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span33791-34438Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU50_09550RefSeq proteinWP_336245000.1
Context group ID
GCF_019125825::NZ_JAHOBL010000018.1::G00010Context members
KSU50_RS18905
Partner locus tags
KSU50_RS18905
Partner old locus tags
KSU50_09550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_336245000.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU50_RS18905Primary locus identifier stored in the genes table.
Old locus tagKSU50_09550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOBL010000018.1Sequence record reported by the local genomic context database.
Genomic interval33 791-34 438 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 791-34 438 ntGCF_019125825::NZ_JAHOBL010000018.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125825::NZ_JAHOBL010000018.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOBL010000018.1All displayed genes belong to this local TCS context.
Neighborhood span33 791-34 438 nt648 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 791 nt34 438 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSU50_RS18905GCF_019125825#KSU50_RS18905
RRLytTRCurrent focus
33 791-34 438 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019125825#KSU50_RS18905The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1920040
Simplified PFAM architecture for RROC_1920040
PFAM domain coverage: 152 / 215 aa (70.7%)
1 aa215 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[21-90] | LytTR[118-199]
- Domain count: 2
- Matched identifier: RROC_1920040
- Positioned domains: Response_reg 21-90 ; LytTR 118-199
Cluster members and taxonomy
Representative gene: GCF_019125825#KSU50_RS18905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019125825
AssemblyASM1912582v1 · Contighaploid
Genome composition3 714 016 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 25 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key