1 Response_reg#1
4-112 aa · 109 aa · 50.0% of protein
Raw token
Response_reg:4:1.32e-36:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU61_RS06595
Response regulator OmpR family
Thomasclavelia ramosa · GCF_019125815
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019125815#KSU61_RS06595Stable P2CS identifier used across views.
GenomeGCF_019125815Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 218 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.5% of protein
Raw token
Trans_reg_C:143:9.8e-23:215:77:77- Raw architecture: Response_reg:4:1.32e-36:112:111:111#Trans_reg_C:143:9.8e-23:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019125815::NZ_JAHOBZ010000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83550-85645Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU61_06600RefSeq proteinWP_008791188.1
Context group ID
GCF_019125815::NZ_JAHOBZ010000010.1::G00001Context members
KSU61_RS06590KSU61_RS06595
Partner locus tags
KSU61_RS06590KSU61_RS06595
Partner old locus tags
KSU61_06595KSU61_06600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008791188.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q7HTA8Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q7HTA8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU61_RS06595Primary locus identifier stored in the genes table.
Old locus tagKSU61_06600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOBZ010000010.1Sequence record reported by the local genomic context database.
Genomic interval84 989-85 645 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 550-85 645 ntGCF_019125815::NZ_JAHOBZ010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125815::NZ_JAHOBZ010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOBZ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span83 550-85 645 nt2 096 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 550 nt85 645 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSU61_RS06590GCF_019125815#KSU61_RS06590
HKClassic
83 550-84 989 nt · Reverse (-)
KSU61_RS06595GCF_019125815#KSU61_RS06595
RROmpRCurrent focus
84 989-85 645 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS03885Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812272
Simplified PFAM architecture for RROC_1812272
PFAM domain coverage: 181 / 218 aa (83.0%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[144-215]
- Domain count: 2
- Matched identifier: RROC_1812272
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 144-215 ; Trans_reg_C 144-215
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS03885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019125815
AssemblyASM1912581v1 · Contighaploid
Genome composition3 712 095 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 25 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key