1 Response_reg#1
4-112 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:4:6.07e-27:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU47_RS07460
Response regulator OmpR family
Thomasclavelia ramosa · GCF_019125565
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019125565#KSU47_RS07460Stable P2CS identifier used across views.
GenomeGCF_019125565Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 33.2% of protein
Raw token
Trans_reg_C:150:8.81e-30:224:75:77- Raw architecture: Response_reg:4:6.07e-27:112:111:111#Trans_reg_C:150:8.81e-30:224:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019125565::NZ_JAHOBC010000013.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26269-26949Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU47_07460RefSeq proteinWP_117792012.1
Context group ID
GCF_019125565::NZ_JAHOBC010000013.1::G00004Context members
KSU47_RS07460
Partner locus tags
KSU47_RS07460
Partner old locus tags
KSU47_07460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117792012.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU47_RS07460Primary locus identifier stored in the genes table.
Old locus tagKSU47_07460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOBC010000013.1Sequence record reported by the local genomic context database.
Genomic interval26 269-26 949 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 269-26 949 ntGCF_019125565::NZ_JAHOBC010000013.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125565::NZ_JAHOBC010000013.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOBC010000013.1All displayed genes belong to this local TCS context.
Neighborhood span26 269-26 949 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 269 nt26 949 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSU47_RS07460GCF_019125565#KSU47_RS07460
RROmpRCurrent focus
26 269-26 949 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019131355#KSY73_RS14730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1099362
Simplified PFAM architecture for RROC_1099362
PFAM domain coverage: 183 / 233 aa (78.5%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-119] | Trans_reg_C[157-230]
- Domain count: 2
- Matched identifier: RROC_1099362
- Positioned domains: Response_reg 11-119 ; Trans_reg_C 157-230
Cluster members and taxonomy
Representative gene: GCF_019131355#KSY73_RS14730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019125565
AssemblyASM1912556v1 · Contighaploid
Genome composition3 713 909 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 25 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key