1 HisKA#1
45-101 aa · 57 aa · 22.4% of protein
Raw token
HisKA:45:0.000000000000219:101:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU57_RS06580
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_019125545
ClassHKTypeClassicLength255 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019125545#KSU57_RS06580Stable P2CS identifier used across views.
GenomeGCF_019125545Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 255 aa (58.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa255 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
150-241 aa · 92 aa · 36.1% of protein
Raw token
HATPase_c:150:0.0000000000000123:241:97:109- Raw architecture: HisKA:45:0.000000000000219:101:57:64#HATPase_c:150:0.0000000000000123:241:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019125545::NZ_JAHOBF010000012.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span23766-24533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU57_06580RefSeq proteinWP_199414795.1
Context group ID
GCF_019125545::NZ_JAHOBF010000012.1::G00003Context members
KSU57_RS06580
Partner locus tags
KSU57_RS06580
Partner old locus tags
KSU57_06580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199414795.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU57_RS06580Primary locus identifier stored in the genes table.
Old locus tagKSU57_06580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOBF010000012.1Sequence record reported by the local genomic context database.
Genomic interval23 766-24 533 nt768 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 766-24 533 ntGCF_019125545::NZ_JAHOBF010000012.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125545::NZ_JAHOBF010000012.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOBF010000012.1All displayed genes belong to this local TCS context.
Neighborhood span23 766-24 533 nt768 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 766 nt24 533 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSU57_RS06580GCF_019125545#KSU57_RS06580
HKClassicCurrent focus
23 766-24 533 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003459445#DWX69_RS10055Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2917162
Simplified PFAM architecture for HKOC_2917162
PFAM domain coverage: 146 / 255 aa (57.3%)
1 aa255 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[44-101] | HATPase_c[150-237]
- Domain count: 2
- Matched identifier: HKOC_2917162
- Positioned domains: HisKA 44-101 ; HATPase_c 150-237
Cluster members and taxonomy
Representative gene: GCF_003459445#DWX69_RS10055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019125545
AssemblyASM1912554v1 · Contighaploid
Genome composition3 777 762 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 25 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key