1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:5.1e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU57_RS03590
Response regulator OmpR family
Thomasclavelia ramosa · GCF_019125545
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019125545#KSU57_RS03590Stable P2CS identifier used across views.
GenomeGCF_019125545Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-227 aa · 75 aa · 32.6% of protein
Raw token
Trans_reg_C:153:8.29e-31:227:75:77- Raw architecture: Response_reg:5:5.1e-39:114:111:111#Trans_reg_C:153:8.29e-31:227:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019125545::NZ_JAHOBF010000005.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71938-73708Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU57_03590RefSeq proteinWP_003536081.1
Context group ID
GCF_019125545::NZ_JAHOBF010000005.1::G00025Context members
KSU57_RS03590KSU57_RS03595
Partner locus tags
KSU57_RS03590KSU57_RS03595
Partner old locus tags
KSU57_03590KSU57_03595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003536081.1Primary protein accession used for annex mappings.
UniProt accessionB0N3F6Primary UniProt accession resolved in the annex database.
UniProt IDB0N3F6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU57_RS03590Primary locus identifier stored in the genes table.
Old locus tagKSU57_03590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOBF010000005.1Sequence record reported by the local genomic context database.
Genomic interval71 938-72 630 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 938-73 708 ntGCF_019125545::NZ_JAHOBF010000005.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125545::NZ_JAHOBF010000005.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOBF010000005.1All displayed genes belong to this local TCS context.
Neighborhood span71 938-73 708 nt1 771 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 938 nt73 708 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSU57_RS03590GCF_019125545#KSU57_RS03590
RROmpRCurrent focus
71 938-72 630 nt · Forward (+)
KSU57_RS03595GCF_019125545#KSU57_RS03595
HKClassic
72 623-73 708 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS04695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200123
Simplified PFAM architecture for RROC_1200123
PFAM domain coverage: 184 / 230 aa (80.0%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1200123
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS04695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019125545
AssemblyASM1912554v1 · Contighaploid
Genome composition3 777 762 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 25 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key