1 HisKA#1
476-542 aa · 67 aa · 9.6% of protein
Raw token
HisKA:476:0.0000000000000527:542:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU58_RS17955
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_019125475
ClassHKTypeClassicLength698 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019125475#KSU58_RS17955Stable P2CS identifier used across views.
GenomeGCF_019125475Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length698 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 698 aa (22.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa698 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
589-680 aa · 92 aa · 13.2% of protein
Raw token
HATPase_c:589:0.0000000000296:680:96:109- Raw architecture: HisKA:476:0.0000000000000527:542:67:64#HATPase_c:589:0.0000000000296:680:96:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019125475::NZ_JAHOAY010000085.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1613-4423Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU58_17975RefSeq proteinWP_009008638.1
Context group ID
GCF_019125475::NZ_JAHOAY010000085.1::G00027Context members
KSU58_RS17955KSU58_RS17960
Partner locus tags
KSU58_RS17955KSU58_RS17960
Partner old locus tags
KSU58_17975KSU58_17980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009008638.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU58_RS17955Primary locus identifier stored in the genes table.
Old locus tagKSU58_17975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOAY010000085.1Sequence record reported by the local genomic context database.
Genomic interval1 613-3 709 nt2 097 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 613-4 423 ntGCF_019125475::NZ_JAHOAY010000085.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125475::NZ_JAHOAY010000085.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOAY010000085.1All displayed genes belong to this local TCS context.
Neighborhood span1 613-4 423 nt2 811 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 613 nt4 423 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSU58_RS17955GCF_019125475#KSU58_RS17955
HKClassicCurrent focus
1 613-3 709 nt · Reverse (-)
KSU58_RS17960GCF_019125475#KSU58_RS17960
RROmpR
3 713-4 423 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003459445#DWX69_RS18155Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0773612
Simplified PFAM architecture for HKOC_0773612
PFAM domain coverage: 159 / 698 aa (22.8%)
1 aa698 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[476-542] | HATPase_c[589-680]
- Domain count: 2
- Matched identifier: HKOC_0773612
- Positioned domains: HisKA 476-542 ; HATPase_c 589-680
Cluster members and taxonomy
Representative gene: GCF_003459445#DWX69_RS18155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019125475
AssemblyASM1912547v1 · Contighaploid
Genome composition3 747 173 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 25 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key