1 Response_reg#1
4-115 aa · 112 aa · 50.0% of protein
Raw token
Response_reg:4:7.61e-29:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSU60_RS07935
Response regulator NarL family
Thomasclavelia ramosa · GCF_019125455
ClassRRTypeNarLLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019125455#KSU60_RS07935Stable P2CS identifier used across views.
GenomeGCF_019125455Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 224 aa (72.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
161-211 aa · 51 aa · 22.8% of protein
Raw token
HTH_LUXR:161:4.86e-19:211:51:58- Raw architecture: Response_reg:4:7.61e-29:115:112:111#HTH_LUXR:161:4.86e-19:211:51:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019125455::NZ_JAHOBV010000014.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65650-67627Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSU60_07945RefSeq proteinWP_003536183.1
Context group ID
GCF_019125455::NZ_JAHOBV010000014.1::G00005Context members
KSU60_RS07935KSU60_RS07940
Partner locus tags
KSU60_RS07935KSU60_RS07940
Partner old locus tags
KSU60_07945KSU60_07950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003536183.1Primary protein accession used for annex mappings.
UniProt accessionB0N3N3Primary UniProt accession resolved in the annex database.
UniProt IDB0N3N3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSU60_RS07935Primary locus identifier stored in the genes table.
Old locus tagKSU60_07945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOBV010000014.1Sequence record reported by the local genomic context database.
Genomic interval65 650-66 324 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 650-67 627 ntGCF_019125455::NZ_JAHOBV010000014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019125455::NZ_JAHOBV010000014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOBV010000014.1All displayed genes belong to this local TCS context.
Neighborhood span65 650-67 627 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 650 nt67 627 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSU60_RS07935GCF_019125455#KSU60_RS07935
RRNarLCurrent focus
65 650-66 324 nt · Reverse (-)
KSU60_RS07940GCF_019125455#KSU60_RS07940
HKClassic
66 317-67 627 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS05070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529070
Simplified PFAM architecture for RROC_1529070
PFAM domain coverage: 165 / 224 aa (73.7%)
1 aa224 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[159-211]
- Domain count: 2
- Matched identifier: RROC_1529070
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 159-211 ; GerE 159-211
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS05070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019125455
AssemblyASM1912545v1 · Contighaploid
Genome composition3 772 607 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 52 · HK 24 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key