1 Response_reg#1
5-116 aa · 112 aa · 46.7% of protein
Raw token
Response_reg:5:0.00000000000000208:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KTT80_RS03170
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_019061315
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019061315#KTT80_RS03170Stable P2CS identifier used across views.
GenomeGCF_019061315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 240 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-215 aa · 78 aa · 32.5% of protein
Raw token
LytTR:138:0.00000000000167:215:83:98- Raw architecture: Response_reg:5:0.00000000000000208:116:114:111#LytTR:138:0.00000000000167:215:83:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019061315::NZ_JAHQYV010000003.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3837-4559Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKTT80_03170RefSeq proteinWP_015537817.1
Context group ID
GCF_019061315::NZ_JAHQYV010000003.1::G00019Context members
KTT80_RS03170
Partner locus tags
KTT80_RS03170
Partner old locus tags
KTT80_03170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015537817.1Primary protein accession used for annex mappings.
UniProt accessionD4KBQ1Primary UniProt accession resolved in the annex database.
UniProt IDD4KBQ1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKTT80_RS03170Primary locus identifier stored in the genes table.
Old locus tagKTT80_03170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHQYV010000003.1Sequence record reported by the local genomic context database.
Genomic interval3 837-4 559 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 837-4 559 ntGCF_019061315::NZ_JAHQYV010000003.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019061315::NZ_JAHQYV010000003.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHQYV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span3 837-4 559 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 837 nt4 559 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KTT80_RS03170GCF_019061315#KTT80_RS03170
RRLytTRCurrent focus
3 837-4 559 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209855#FPR_RS10290Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882442
Simplified PFAM architecture for RROC_0882442
PFAM domain coverage: 174 / 240 aa (72.5%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-113] | LytTR[137-201]
- Domain count: 2
- Matched identifier: RROC_0882442
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; LytTR 137-201 ; LytTR 137-201
Cluster members and taxonomy
Representative gene: GCF_000209855#FPR_RS10290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_019061315
AssemblyASM1906131v1 · Contighaploid
Genome composition2 917 543 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 27 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key