1 HAMP#1
70-137 aa · 68 aa · 18.2% of protein
Raw token
HAMP:70:0.00000000145:137:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KTQ95_RS11330
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_019052555
ClassHKTypeClassicLength373 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019052555#KTQ95_RS11330Stable P2CS identifier used across views.
GenomeGCF_019052555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length373 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 373 aa (63.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa373 aa
Domain-by-domain annotation3 items
2 HisKA#2
158-221 aa · 64 aa · 17.2% of protein
Raw token
HisKA:158:0.000000006:221:64:643 HATPase_c#3
271-373 aa · 103 aa · 27.6% of protein
Raw token
HATPase_c:271:1.53e-16:373:106:109- Raw architecture: HAMP:70:0.00000000145:137:70:69#HisKA:158:0.000000006:221:64:64#HATPase_c:271:1.53e-16:373:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019052555::NZ_JAHQUV010000018.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59636-61422Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKTQ95_11255RefSeq proteinWP_196930964.1
Context group ID
GCF_019052555::NZ_JAHQUV010000018.1::G00009Context members
KTQ95_RS11330KTQ95_RS11335
Partner locus tags
KTQ95_RS11330KTQ95_RS11335
Partner old locus tags
KTQ95_11255KTQ95_11260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_196930964.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKTQ95_RS11330Primary locus identifier stored in the genes table.
Old locus tagKTQ95_11255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHQUV010000018.1Sequence record reported by the local genomic context database.
Genomic interval59 636-60 757 nt1 122 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 636-61 422 ntGCF_019052555::NZ_JAHQUV010000018.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019052555::NZ_JAHQUV010000018.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHQUV010000018.1All displayed genes belong to this local TCS context.
Neighborhood span59 636-61 422 nt1 787 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 636 nt61 422 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KTQ95_RS11330GCF_019052555#KTQ95_RS11330
HKClassicCurrent focus
59 636-60 757 nt · Reverse (-)
KTQ95_RS11335GCF_019052555#KTQ95_RS11335
RROmpR
60 754-61 422 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052555#KTQ95_RS11330The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2666929
Simplified PFAM architecture for HKOC_2666929
PFAM domain coverage: 166 / 373 aa (44.5%)
1 aa373 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[158-221] | HATPase_c[271-372]
- Domain count: 2
- Matched identifier: HKOC_2666929
- Positioned domains: HisKA 158-221 ; HATPase_c 271-372
Cluster members and taxonomy
Representative gene: GCF_019052555#KTQ95_RS11330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019052555
AssemblyASM1905255v1 · Contighaploid
Genome composition3 724 105 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 61 · HK 28 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key