1 HAMP#1
156-225 aa · 70 aa · 15.8% of protein
Raw token
HAMP:156:0.00000122:225:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KTF99_RS17515
Histidine kinase, Classic
Erysipelatoclostridium sp. MSK.7.34 · GCF_019041935
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019041935#KTF99_RS17515Stable P2CS identifier used across views.
GenomeGCF_019041935Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 442 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation3 items
2 HisKA#2
239-297 aa · 59 aa · 13.3% of protein
Raw token
HisKA:239:0.00000000151:297:59:643 HATPase_c#3
348-440 aa · 93 aa · 21.0% of protein
Raw token
HATPase_c:348:0.00000545:440:110:109- Raw architecture: HAMP:156:0.00000122:225:70:69#HisKA:239:0.00000000151:297:59:64#HATPase_c:348:0.00000545:440:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019041935::NZ_JAHPYJ010000006.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61906-63928Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKTF99_06125RefSeq proteinWP_217215496.1
Context group ID
GCF_019041935::NZ_JAHPYJ010000006.1::G00027Context members
KTF99_RS17515KTF99_RS06150
Partner locus tags
KTF99_RS17515KTF99_RS06150
Partner old locus tags
KTF99_06125KTF99_06130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217215496.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKTF99_RS17515Primary locus identifier stored in the genes table.
Old locus tagKTF99_06125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHPYJ010000006.1Sequence record reported by the local genomic context database.
Genomic interval61 906-63 234 nt1 329 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 906-63 928 ntGCF_019041935::NZ_JAHPYJ010000006.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019041935::NZ_JAHPYJ010000006.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHPYJ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span61 906-63 928 nt2 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 906 nt63 928 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KTF99_RS17515GCF_019041935#KTF99_RS17515
HKClassicCurrent focus
61 906-63 234 nt · Reverse (-)
KTF99_RS06150GCF_019041935#KTF99_RS06150
RROmpR
63 227-63 928 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019041935#KTF99_RS17515The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2056036
Simplified PFAM architecture for HKOC_2056036
PFAM domain coverage: 58 / 442 aa (13.1%)
1 aa442 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[239-296]
- Domain count: 1
- Matched identifier: HKOC_2056036
- Positioned domains: HisKA 239-296
Cluster members and taxonomy
Representative gene: GCF_019041935#KTF99_RS17515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 849 178 · GCF_019041935
AssemblyContighaploid
Genome composition3 485 511 bp · 31,5% GCErysipelatoclostridium sp. MSK.7.34
Signal transduction countsGenes 52 · HK 24 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key