1 Response_reg#1
4-103 aa · 100 aa · 42.7% of protein
Raw token
Response_reg:4:0.00000000000348:103:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KTF99_RS04455
Response regulator LytTR family
Erysipelatoclostridium sp. MSK.7.34 · GCF_019041935
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019041935#KTF99_RS04455Stable P2CS identifier used across views.
GenomeGCF_019041935Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-221 aa · 88 aa · 37.6% of protein
Raw token
LytTR:134:0.000000000139:221:93:98- Raw architecture: Response_reg:4:0.00000000000348:103:106:111#LytTR:134:0.000000000139:221:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019041935::NZ_JAHPYJ010000004.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span126025-126729Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKTF99_04440RefSeq proteinWP_217215466.1
Context group ID
GCF_019041935::NZ_JAHPYJ010000004.1::G00022Context members
KTF99_RS04455
Partner locus tags
KTF99_RS04455
Partner old locus tags
KTF99_04440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217215466.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKTF99_RS04455Primary locus identifier stored in the genes table.
Old locus tagKTF99_04440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHPYJ010000004.1Sequence record reported by the local genomic context database.
Genomic interval126 025-126 729 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span126 025-126 729 ntGCF_019041935::NZ_JAHPYJ010000004.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019041935::NZ_JAHPYJ010000004.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHPYJ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span126 025-126 729 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 025 nt126 729 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KTF99_RS04455GCF_019041935#KTF99_RS04455
RRLytTRCurrent focus
126 025-126 729 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019041935#KTF99_RS04455The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1062954
Simplified PFAM architecture for RROC_1062954
PFAM domain coverage: 195 / 234 aa (83.3%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[136-221]
- Domain count: 2
- Matched identifier: RROC_1062954
- Positioned domains: Response_reg 4-112 ; LytTR 136-221
Cluster members and taxonomy
Representative gene: GCF_019041935#KTF99_RS04455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 849 178 · GCF_019041935
AssemblyContighaploid
Genome composition3 485 511 bp · 31,5% GCErysipelatoclostridium sp. MSK.7.34
Signal transduction countsGenes 52 · HK 24 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key