1 Response_reg#1
12-97 aa · 86 aa · 41.1% of protein
Raw token
Response_reg:12:0.00000000000000378:97:90:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KTF48_RS03215
Response regulator NarL family
Bifidobacterium adolescentis · GCF_019041695
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019041695#KTF48_RS03215Stable P2CS identifier used across views.
GenomeGCF_019041695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 209 aa (67.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-202 aa · 56 aa · 26.8% of protein
Raw token
HTH_LUXR:147:0.00000000000000146:202:56:58- Raw architecture: Response_reg:12:0.00000000000000378:97:90:111#HTH_LUXR:147:0.00000000000000146:202:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019041695::NZ_JAHPXU010000002.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span308193-308822Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKTF48_03215RefSeq proteinWP_217055222.1
Context group ID
GCF_019041695::NZ_JAHPXU010000002.1::G00010Context members
KTF48_RS03215
Partner locus tags
KTF48_RS03215
Partner old locus tags
KTF48_03215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217055222.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKTF48_RS03215Primary locus identifier stored in the genes table.
Old locus tagKTF48_03215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHPXU010000002.1Sequence record reported by the local genomic context database.
Genomic interval308 193-308 822 nt630 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span308 193-308 822 ntGCF_019041695::NZ_JAHPXU010000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019041695::NZ_JAHPXU010000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHPXU010000002.1All displayed genes belong to this local TCS context.
Neighborhood span308 193-308 822 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
308 193 nt308 822 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KTF48_RS03215GCF_019041695#KTF48_RS03215
RRNarLCurrent focus
308 193-308 822 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019041695#KTF48_RS03215The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2049288
Simplified PFAM architecture for RROC_2049288
PFAM domain coverage: 145 / 209 aa (69.4%)
1 aa209 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-101] | GerE[148-202]
- Domain count: 2
- Matched identifier: RROC_2049288
- Positioned domains: Response_reg 12-101 ; GerE 148-202
Cluster members and taxonomy
Representative gene: GCF_019041695#KTF48_RS03215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_019041695
AssemblyContighaploid
Genome composition2 128 384 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key