1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:3.38e-41:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KPL75_RS12845
Response regulator OmpR family
Bacillus sp. NP247 · GCF_018966865
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018966865#KPL75_RS12845Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:3.2e-28:221:77:77- Raw architecture: Response_reg:3:3.38e-41:112:111:111#Trans_reg_C:148:3.2e-28:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018966865::NZ_CP076653.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2421292-2423405Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKPL75_12840RefSeq proteinWP_002198808.1
Context group ID
GCF_018966865::NZ_CP076653.1::G00027Context members
KPL75_RS12840KPL75_RS12845
Partner locus tags
KPL75_RS12840KPL75_RS12845
Partner old locus tags
KPL75_12835KPL75_12840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002198808.1Primary protein accession used for annex mappings.
UniProt accessionR8CS56Primary UniProt accession resolved in the annex database.
UniProt IDR8CS56_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKPL75_RS12845Primary locus identifier stored in the genes table.
Old locus tagKPL75_12840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP076653.1Sequence record reported by the local genomic context database.
Genomic interval2 422 734-2 423 405 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 421 292-2 423 405 ntGCF_018966865::NZ_CP076653.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018966865::NZ_CP076653.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP076653.1All displayed genes belong to this local TCS context.
Neighborhood span2 421 292-2 423 405 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 421 292 nt2 423 405 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KPL75_RS12840GCF_018966865#KPL75_RS12840
HKClassic
2 421 292-2 422 722 nt · Reverse (-)
KPL75_RS12845GCF_018966865#KPL75_RS12845
RROmpRCurrent focus
2 422 734-2 423 405 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291295#IEE_RS01225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588542
Simplified PFAM architecture for RROC_1588542
PFAM domain coverage: 182 / 223 aa (81.6%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1588542
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000291295#IEE_RS01225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 846 779 · GCF_018966865
AssemblyASM1896686v1 · Complete Genomehaploid
Genome composition5 280 486 bp · 35,5% GCBacillus sp. NP247
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key