1 Response_reg#1
5-112 aa · 108 aa · 47.2% of protein
Raw token
Response_reg:5:1.31e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KPL75_RS11820
Response regulator OmpR family
Bacillus sp. NP247 · GCF_018966865
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018966865#KPL75_RS11820Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 229 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:150:3.71e-25:225:76:77- Raw architecture: Response_reg:5:1.31e-32:112:110:111#Trans_reg_C:150:3.71e-25:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018966865::NZ_CP076653.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2214160-2216294Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKPL75_11815RefSeq proteinWP_128856383.1
Context group ID
GCF_018966865::NZ_CP076653.1::G00024Context members
KPL75_RS11815KPL75_RS11820
Partner locus tags
KPL75_RS11815KPL75_RS11820
Partner old locus tags
KPL75_11810KPL75_11815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_128856383.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKPL75_RS11820Primary locus identifier stored in the genes table.
Old locus tagKPL75_11815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP076653.1Sequence record reported by the local genomic context database.
Genomic interval2 215 605-2 216 294 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 214 160-2 216 294 ntGCF_018966865::NZ_CP076653.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018966865::NZ_CP076653.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP076653.1All displayed genes belong to this local TCS context.
Neighborhood span2 214 160-2 216 294 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 214 160 nt2 216 294 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KPL75_RS11815GCF_018966865#KPL75_RS11815
HKClassic
2 214 160-2 215 605 nt · Reverse (-)
KPL75_RS11820GCF_018966865#KPL75_RS11820
RROmpRCurrent focus
2 215 605-2 216 294 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002081505#CDB3_RS25380Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1256680
Simplified PFAM architecture for RROC_1256680
PFAM domain coverage: 183 / 229 aa (79.9%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[150-224]
- Domain count: 2
- Matched identifier: RROC_1256680
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 150-224 ; Trans_reg_C 150-224
Cluster members and taxonomy
Representative gene: GCF_002081505#CDB3_RS25380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 846 779 · GCF_018966865
AssemblyASM1896686v1 · Complete Genomehaploid
Genome composition5 280 486 bp · 35,5% GCBacillus sp. NP247
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key