1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:3.3e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1H28_RS13340
Response regulator OmpR family
Clostridioides difficile · GCF_018884945
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018884945#E1H28_RS13340Stable P2CS identifier used across views.
GenomeGCF_018884945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:151:3.95e-32:227:77:77- Raw architecture: Response_reg:4:3.3e-28:113:111:111#Trans_reg_C:151:3.95e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018884945::NZ_CP037840.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2834360-2836371Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE1H28_13655RefSeq proteinWP_021359503.1
Context group ID
GCF_018884945::NZ_CP037840.1::G00041Context members
E1H28_RS13335E1H28_RS13340
Partner locus tags
E1H28_RS13335E1H28_RS13340
Partner old locus tags
E1H28_13650E1H28_13655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021359503.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1H28_RS13340Primary locus identifier stored in the genes table.
Old locus tagE1H28_13655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP037840.1Sequence record reported by the local genomic context database.
Genomic interval2 835 664-2 836 371 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 834 360-2 836 371 ntGCF_018884945::NZ_CP037840.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018884945::NZ_CP037840.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP037840.1All displayed genes belong to this local TCS context.
Neighborhood span2 834 360-2 836 371 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 834 360 nt2 836 371 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E1H28_RS13335GCF_018884945#E1H28_RS13335
HKClassic
2 834 360-2 835 670 nt · Reverse (-)
E1H28_RS13340GCF_018884945#E1H28_RS13340
RROmpRCurrent focus
2 835 664-2 836 371 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448825#QAO_RS12505Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018265
Simplified PFAM architecture for RROC_1018265
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1018265
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000448825#QAO_RS12505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_018884945
AssemblyASM1888494v1 · Complete Genomehaploid
Genome composition4 272 298 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key