1 Response_reg#1
4-114 aa · 111 aa · 84.7% of protein
Raw token
Response_reg:4:3.54e-19:114:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1H40_RS18320
Response regulator, CheY family
Clostridioides difficile · GCF_018884725
ClassRRTypeCheYLength131 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018884725#E1H40_RS18320Stable P2CS identifier used across views.
GenomeGCF_018884725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length131 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 131 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa131 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.54e-19:114:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018884725::NZ_CP037811.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3339090-3339485Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_018884725::NZ_CP037811.1::G00046Context members
E1H40_RS18320
Partner locus tags
E1H40_RS18320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235698396.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1H40_RS18320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP037811.1Sequence record reported by the local genomic context database.
Genomic interval3 339 090-3 339 485 nt396 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 339 090-3 339 485 ntGCF_018884725::NZ_CP037811.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018884725::NZ_CP037811.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP037811.1All displayed genes belong to this local TCS context.
Neighborhood span3 339 090-3 339 485 nt396 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 339 090 nt3 339 485 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E1H40_RS18320GCF_018884725#E1H40_RS18320
RRCheYCurrent focus
3 339 090-3 339 485 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018884725#E1H40_RS18320The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2318396
Simplified PFAM architecture for RROC_2318396
PFAM domain coverage: 113 / 131 aa (86.3%)
1 aa131 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-116]
- Domain count: 1
- Matched identifier: RROC_2318396
- Positioned domains: Response_reg 4-116
Cluster members and taxonomy
Representative gene: GCF_018884725#E1H40_RS18320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_018884725
AssemblyASM1888472v1 · Complete Genomehaploid
Genome composition3 936 124 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key