1 HisKA#1
304-371 aa · 68 aa · 12.7% of protein
Raw token
HisKA:304:0.000000000000135:371:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1H40_RS02800
Histidine kinase, Classic
Clostridioides difficile · GCF_018884725
ClassHKTypeClassicLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018884725#E1H40_RS02800Stable P2CS identifier used across views.
GenomeGCF_018884725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 535 aa (33.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
416-525 aa · 110 aa · 20.6% of protein
Raw token
HATPase_c:416:6.54e-31:525:110:109- Raw architecture: HisKA:304:0.000000000000135:371:68:64#HATPase_c:416:6.54e-31:525:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018884725::NZ_CP037811.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span535277-537579Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE1H40_02875RefSeq proteinWP_003417858.1
Context group ID
GCF_018884725::NZ_CP037811.1::G00006Context members
E1H40_RS02800E1H40_RS02805
Partner locus tags
E1H40_RS02800E1H40_RS02805
Partner old locus tags
E1H40_02875E1H40_02880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417858.1Primary protein accession used for annex mappings.
UniProt accessionD5Q0A9Primary UniProt accession resolved in the annex database.
UniProt IDD5Q0A9_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1H40_RS02800Primary locus identifier stored in the genes table.
Old locus tagE1H40_02875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP037811.1Sequence record reported by the local genomic context database.
Genomic interval535 277-536 884 nt1 608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span535 277-537 579 ntGCF_018884725::NZ_CP037811.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018884725::NZ_CP037811.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP037811.1All displayed genes belong to this local TCS context.
Neighborhood span535 277-537 579 nt2 303 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
535 277 nt537 579 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E1H40_RS02800GCF_018884725#E1H40_RS02800
HKClassicCurrent focus
535 277-536 884 nt · Forward (+)
E1H40_RS02805GCF_018884725#E1H40_RS02805
RROmpR
536 875-537 579 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164175#HMPREF0220_RS08690Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1338518
Simplified PFAM architecture for HKOC_1338518
PFAM domain coverage: 286 / 535 aa (53.5%)
1 aa535 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[32-139] | HisKA[304-371] | HATPase_c[416-525]
- Domain count: 3
- Matched identifier: HKOC_1338518
- Positioned domains: DUF4118 32-139 ; HisKA 304-371 ; HATPase_c 416-525
Cluster members and taxonomy
Representative gene: GCF_000164175#HMPREF0220_RS08690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_018884725
AssemblyASM1888472v1 · Complete Genomehaploid
Genome composition3 936 124 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key