1 HisKA#1
91-157 aa · 67 aa · 21.5% of protein
Raw token
HisKA:91:0.00000314:157:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK41_RS09660
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_018785715
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018785715#GPK41_RS09660Stable P2CS identifier used across views.
GenomeGCF_018785715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
External referencesMIST4 GPK41_RS09660MIST4
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 311 aa (55.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
203-309 aa · 107 aa · 34.4% of protein
Raw token
HATPase_c:203:1.3e-26:309:107:109- Raw architecture: HisKA:91:0.00000314:157:67:64#HATPase_c:203:1.3e-26:309:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018785715::NZ_WQQI01000007.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span659355-661013Genomic interval covered by the local TCS group.
Context group ID
GCF_018785715::NZ_WQQI01000007.1::G00008Context members
GPK41_RS04645GPK41_RS09660
Partner locus tags
GPK41_RS04645GPK41_RS09660
Partner old locus tags
GPK41_04655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK41_RS09660Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_WQQI01000007.1Sequence record reported by the local genomic context database.
Genomic interval659 984-661 013 nt1 030 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span659 355-661 013 ntGCF_018785715::NZ_WQQI01000007.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018785715::NZ_WQQI01000007.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQQI01000007.1All displayed genes belong to this local TCS context.
Neighborhood span659 355-661 013 nt1 659 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
659 355 nt661 013 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK41_RS04645GCF_018785715#GPK41_RS04645
RROmpR
659 355-659 987 nt · Forward (+)
GPK41_RS09660GCF_018785715#GPK41_RS09660
HKClassicCurrent focus
659 984-661 013 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018785715#GPK41_RS09660The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2877535
Simplified PFAM architecture for HKOC_2877535
PFAM domain coverage: 108 / 311 aa (34.7%)
1 aa311 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[203-310]
- Domain count: 1
- Matched identifier: HKOC_2877535
- Positioned domains: HATPase_c 203-310
Cluster members and taxonomy
Representative gene: GCF_018785715#GPK41_RS09660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_018785715
AssemblyASM1878571v1 · Scaffoldhaploid
Genome composition2 257 425 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key