1 Response_reg#1
4-94 aa · 91 aa · 43.3% of protein
Raw token
Response_reg:4:1.64e-25:94:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK41_RS04645
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_018785715
ClassRRTypeOmpRLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018785715#GPK41_RS04645Stable P2CS identifier used across views.
GenomeGCF_018785715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 210 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
128-204 aa · 77 aa · 36.7% of protein
Raw token
Trans_reg_C:128:2.38e-27:204:78:77- Raw architecture: Response_reg:4:1.64e-25:94:91:111#Trans_reg_C:128:2.38e-27:204:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018785715::NZ_WQQI01000007.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span659355-661013Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK41_04655RefSeq proteinWP_276571186.1
Context group ID
GCF_018785715::NZ_WQQI01000007.1::G00008Context members
GPK41_RS04645GPK41_RS09660
Partner locus tags
GPK41_RS04645GPK41_RS09660
Partner old locus tags
GPK41_04655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276571186.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK41_RS04645Primary locus identifier stored in the genes table.
Old locus tagGPK41_04655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQQI01000007.1Sequence record reported by the local genomic context database.
Genomic interval659 355-659 987 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span659 355-661 013 ntGCF_018785715::NZ_WQQI01000007.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018785715::NZ_WQQI01000007.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQQI01000007.1All displayed genes belong to this local TCS context.
Neighborhood span659 355-661 013 nt1 659 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
659 355 nt661 013 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK41_RS04645GCF_018785715#GPK41_RS04645
RROmpRCurrent focus
659 355-659 987 nt · Forward (+)
GPK41_RS09660GCF_018785715#GPK41_RS09660
HKClassic
659 984-661 013 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018785715#GPK41_RS04645The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2029603
Simplified PFAM architecture for RROC_2029603
PFAM domain coverage: 166 / 210 aa (79.0%)
1 aa210 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-93] | Trans_reg_C[128-203]
- Domain count: 2
- Matched identifier: RROC_2029603
- Positioned domains: Response_reg 4-93 ; Trans_reg_C 128-203
Cluster members and taxonomy
Representative gene: GCF_018785715#GPK41_RS04645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_018785715
AssemblyASM1878571v1 · Scaffoldhaploid
Genome composition2 257 425 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key