1 HisKA_3#1
201-265 aa · 65 aa · 15.9% of protein
Raw token
HisKA_3:201:0.0000000691:265:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK44_RS06035
Histidine kinase, Classic
Bifidobacterium longum · GCF_018785685
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018785685#GPK44_RS06035Stable P2CS identifier used across views.
GenomeGCF_018785685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 410 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000305:392:86:109- Raw architecture: HisKA_3:201:0.0000000691:265:65:68#HATPase_c:322:0.0000305:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018785685::NZ_WQQF01000019.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span143170-145162Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK44_06195RefSeq proteinWP_165501986.1
Context group ID
GCF_018785685::NZ_WQQF01000019.1::G00004Context members
GPK44_RS06030GPK44_RS06035
Partner locus tags
GPK44_RS06030GPK44_RS06035
Partner old locus tags
GPK44_06190GPK44_06195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165501986.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK44_RS06035Primary locus identifier stored in the genes table.
Old locus tagGPK44_06195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQQF01000019.1Sequence record reported by the local genomic context database.
Genomic interval143 930-145 162 nt1 233 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span143 170-145 162 ntGCF_018785685::NZ_WQQF01000019.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018785685::NZ_WQQF01000019.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQQF01000019.1All displayed genes belong to this local TCS context.
Neighborhood span143 170-145 162 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 170 nt145 162 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK44_RS06030GCF_018785685#GPK44_RS06030
RRNarL
143 170-143 895 nt · Reverse (-)
GPK44_RS06035GCF_018785685#GPK44_RS06035
HKClassicCurrent focus
143 930-145 162 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003094995#DD707_RS04395Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2355669
Simplified PFAM architecture for HKOC_2355669
PFAM domain coverage: 69 / 410 aa (16.8%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-268]
- Domain count: 1
- Matched identifier: HKOC_2355669
- Positioned domains: HisKA_3 200-268
Cluster members and taxonomy
Representative gene: GCF_003094995#DD707_RS04395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_018785685
AssemblyASM1878568v1 · Scaffoldhaploid
Genome composition2 439 598 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key