1 Response_reg#1
27-138 aa · 112 aa · 46.5% of protein
Raw token
Response_reg:27:1.16e-27:138:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK44_RS06030
Response regulator NarL family
Bifidobacterium longum · GCF_018785685
ClassRRTypeNarLLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018785685#GPK44_RS06030Stable P2CS identifier used across views.
GenomeGCF_018785685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 241 aa (70.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
176-232 aa · 57 aa · 23.7% of protein
Raw token
HTH_LUXR:176:2.93e-16:232:58:58- Raw architecture: Response_reg:27:1.16e-27:138:112:111#HTH_LUXR:176:2.93e-16:232:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018785685::NZ_WQQF01000019.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span143170-145162Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK44_06190RefSeq proteinWP_032738970.1
Context group ID
GCF_018785685::NZ_WQQF01000019.1::G00004Context members
GPK44_RS06030GPK44_RS06035
Partner locus tags
GPK44_RS06030GPK44_RS06035
Partner old locus tags
GPK44_06190GPK44_06195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032738970.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A2STL1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A2STL1_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK44_RS06030Primary locus identifier stored in the genes table.
Old locus tagGPK44_06190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQQF01000019.1Sequence record reported by the local genomic context database.
Genomic interval143 170-143 895 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span143 170-145 162 ntGCF_018785685::NZ_WQQF01000019.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018785685::NZ_WQQF01000019.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQQF01000019.1All displayed genes belong to this local TCS context.
Neighborhood span143 170-145 162 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 170 nt145 162 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK44_RS06030GCF_018785685#GPK44_RS06030
RRNarLCurrent focus
143 170-143 895 nt · Reverse (-)
GPK44_RS06035GCF_018785685#GPK44_RS06035
HKClassic
143 930-145 162 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000261265#HMPREF1312_RS05190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0863157
Simplified PFAM architecture for RROC_0863157
PFAM domain coverage: 165 / 241 aa (68.5%)
1 aa241 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[25-138] | Sigma70_r4_2[170-220]
- Domain count: 2
- Matched identifier: RROC_0863157
- Positioned domains: Response_reg 25-138 ; Response_reg 25-138 ; Sigma70_r4_2 170-220 ; Sigma70_r4_2 170-220
Cluster members and taxonomy
Representative gene: GCF_000261265#HMPREF1312_RS05190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_018785685
AssemblyASM1878568v1 · Scaffoldhaploid
Genome composition2 439 598 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key