1 HAMP#1
303-380 aa · 78 aa · 12.8% of protein
Raw token
HAMP:303:0.00000000168:380:78:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS10310
Histidine kinase, Classic
Agathobacter rectalis · GCF_018784725
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784725#GPK75_RS10310Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 609 aa (42.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa609 aa
Domain-by-domain annotation3 items
2 His_kinase#2
395-474 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:395:7.37e-23:474:80:803 HATPase_c#3
494-596 aa · 103 aa · 16.9% of protein
Raw token
HATPase_c:494:0.00000000000358:596:104:109- Raw architecture: HAMP:303:0.00000000168:380:78:69#His_kinase:395:7.37e-23:474:80:80#HATPase_c:494:0.00000000000358:596:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784725::NZ_WQOP01000052.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span225-3633Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_10165RefSeq proteinWP_041254327.1
Context group ID
GCF_018784725::NZ_WQOP01000052.1::G00040Context members
GPK75_RS10310GPK75_RS10315
Partner locus tags
GPK75_RS10310GPK75_RS10315
Partner old locus tags
GPK75_10165GPK75_10170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_041254327.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS10310Primary locus identifier stored in the genes table.
Old locus tagGPK75_10165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000052.1Sequence record reported by the local genomic context database.
Genomic interval225-2 054 nt1 830 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span225-3 633 ntGCF_018784725::NZ_WQOP01000052.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000052.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000052.1All displayed genes belong to this local TCS context.
Neighborhood span225-3 633 nt3 409 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
225 nt3 633 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK75_RS10310GCF_018784725#GPK75_RS10310
HKClassicCurrent focus
225-2 054 nt · Forward (+)
GPK75_RS10315GCF_018784725#GPK75_RS10315
RRunclassified
2 026-3 633 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS15690Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1008556
Simplified PFAM architecture for HKOC_1008556
PFAM domain coverage: 181 / 609 aa (29.7%)
1 aa609 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[396-473] | HATPase_c[494-596]
- Domain count: 2
- Matched identifier: HKOC_1008556
- Positioned domains: His_kinase 396-473 ; HATPase_c 494-596
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS15690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key