1 Response_reg#1
3-104 aa · 102 aa · 44.3% of protein
Raw token
Response_reg:3:0.000000000000016:104:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS10095
Response regulator LytTR family
Agathobacter rectalis · GCF_018784725
ClassRRTypeLytTRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784725#GPK75_RS10095Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 230 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 LytTR#2
132-222 aa · 91 aa · 39.6% of protein
Raw token
LytTR:132:8.32e-18:222:96:98- Raw architecture: Response_reg:3:0.000000000000016:104:105:111#LytTR:132:8.32e-18:222:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784725::NZ_WQOP01000044.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4485-5177Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_09955RefSeq proteinWP_306779072.1
Context group ID
GCF_018784725::NZ_WQOP01000044.1::G00038Context members
GPK75_RS10095
Partner locus tags
GPK75_RS10095
Partner old locus tags
GPK75_09955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306779072.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS10095Primary locus identifier stored in the genes table.
Old locus tagGPK75_09955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000044.1Sequence record reported by the local genomic context database.
Genomic interval4 485-5 177 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 485-5 177 ntGCF_018784725::NZ_WQOP01000044.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000044.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000044.1All displayed genes belong to this local TCS context.
Neighborhood span4 485-5 177 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 485 nt5 177 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK75_RS10095GCF_018784725#GPK75_RS10095
RRLytTRCurrent focus
4 485-5 177 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784725#GPK75_RS10095The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1221599
Simplified PFAM architecture for RROC_1221599
PFAM domain coverage: 195 / 230 aa (84.8%)
1 aa230 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-107] | LytTR[132-221]
- Domain count: 2
- Matched identifier: RROC_1221599
- Positioned domains: Response_reg 3-107 ; LytTR 132-221
Cluster members and taxonomy
Representative gene: GCF_018784725#GPK75_RS10095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key