1 HisKA#1
194-255 aa · 62 aa · 15.6% of protein
Raw token
HisKA:194:0.00000000000181:255:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS09625
Histidine kinase, Classic
Agathobacter rectalis · GCF_018784725
ClassHKTypeClassicLength398 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784725#GPK75_RS09625Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length398 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 398 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa398 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
311-397 aa · 87 aa · 21.9% of protein
Raw token
HATPase_c:311:0.0000583:397:105:109- Raw architecture: HisKA:194:0.00000000000181:255:62:64#HATPase_c:311:0.0000583:397:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784725::NZ_WQOP01000040.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37180-39061Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_09475RefSeq proteinWP_306779042.1
Context group ID
GCF_018784725::NZ_WQOP01000040.1::G00035Context members
GPK75_RS09625GPK75_RS09630
Partner locus tags
GPK75_RS09625GPK75_RS09630
Partner old locus tags
GPK75_09475GPK75_09480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306779042.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS09625Primary locus identifier stored in the genes table.
Old locus tagGPK75_09475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000040.1Sequence record reported by the local genomic context database.
Genomic interval37 180-38 376 nt1 197 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 180-39 061 ntGCF_018784725::NZ_WQOP01000040.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000040.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000040.1All displayed genes belong to this local TCS context.
Neighborhood span37 180-39 061 nt1 882 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 180 nt39 061 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK75_RS09625GCF_018784725#GPK75_RS09625
HKClassicCurrent focus
37 180-38 376 nt · Reverse (-)
GPK75_RS09630GCF_018784725#GPK75_RS09630
RROmpR
38 366-39 061 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784725#GPK75_RS09625The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2463944
Simplified PFAM architecture for HKOC_2463944
PFAM domain coverage: 62 / 398 aa (15.6%)
1 aa398 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[195-256]
- Domain count: 1
- Matched identifier: HKOC_2463944
- Positioned domains: HisKA 195-256
Cluster members and taxonomy
Representative gene: GCF_018784725#GPK75_RS09625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key