1 Response_reg#1
3-113 aa · 111 aa · 47.2% of protein
Raw token
Response_reg:3:2.69e-18:113:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS09065
Response regulator LytTR family
Agathobacter rectalis · GCF_018784725
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784725#GPK75_RS09065Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 235 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-226 aa · 88 aa · 37.4% of protein
Raw token
LytTR:139:7.5e-21:226:93:98- Raw architecture: Response_reg:3:2.69e-18:113:115:111#LytTR:139:7.5e-21:226:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784725::NZ_WQOP01000039.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22034-22741Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_08920RefSeq proteinWP_055223203.1
Context group ID
GCF_018784725::NZ_WQOP01000039.1::G00033Context members
GPK75_RS09065
Partner locus tags
GPK75_RS09065
Partner old locus tags
GPK75_08920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055223203.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YET1Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YET1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS09065Primary locus identifier stored in the genes table.
Old locus tagGPK75_08920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000039.1Sequence record reported by the local genomic context database.
Genomic interval22 034-22 741 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 034-22 741 ntGCF_018784725::NZ_WQOP01000039.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000039.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000039.1All displayed genes belong to this local TCS context.
Neighborhood span22 034-22 741 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 034 nt22 741 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK75_RS09065GCF_018784725#GPK75_RS09065
RRLytTRCurrent focus
22 034-22 741 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404855#AQ987_RS03225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1020284
Simplified PFAM architecture for RROC_1020284
PFAM domain coverage: 202 / 235 aa (86.0%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_1020284
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_001404855#AQ987_RS03225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key