1 sCache_like#1
69-130 aa · 62 aa · 14.1% of protein
Raw token
sCache_like:69:0.00000314:130:62:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS08635
Histidine kinase, Classic
Agathobacter rectalis · GCF_018784725
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784725#GPK75_RS08635Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 440 aa (53.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
222-287 aa · 66 aa · 15.0% of protein
Raw token
HisKA:222:4.59e-18:287:66:643 HATPase_c#3
332-440 aa · 109 aa · 24.8% of protein
Raw token
HATPase_c:332:8.08e-32:440:109:109- Raw architecture: sCache_like:69:0.00000314:130:62:114#HisKA:222:4.59e-18:287:66:64#HATPase_c:332:8.08e-32:440:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784725::NZ_WQOP01000034.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50907-52943Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_08490RefSeq proteinWP_015516045.1
Context group ID
GCF_018784725::NZ_WQOP01000034.1::G00031Context members
GPK75_RS08630GPK75_RS08635
Partner locus tags
GPK75_RS08630GPK75_RS08635
Partner old locus tags
GPK75_08485GPK75_08490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015516045.1Primary protein accession used for annex mappings.
UniProt accessionA0A396FV38Primary UniProt accession resolved in the annex database.
UniProt IDA0A396FV38_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS08635Primary locus identifier stored in the genes table.
Old locus tagGPK75_08490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000034.1Sequence record reported by the local genomic context database.
Genomic interval51 621-52 943 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 907-52 943 ntGCF_018784725::NZ_WQOP01000034.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000034.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000034.1All displayed genes belong to this local TCS context.
Neighborhood span50 907-52 943 nt2 037 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 907 nt52 943 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK75_RS08630GCF_018784725#GPK75_RS08630
RROmpR
50 907-51 575 nt · Forward (+)
GPK75_RS08635GCF_018784725#GPK75_RS08635
HKClassicCurrent focus
51 621-52 943 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209935#EUR_RS04050Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2071684
Simplified PFAM architecture for HKOC_2071684
PFAM domain coverage: 172 / 440 aa (39.1%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[223-287] | HATPase_c[333-439]
- Domain count: 2
- Matched identifier: HKOC_2071684
- Positioned domains: HisKA 223-287 ; HATPase_c 333-439
Cluster members and taxonomy
Representative gene: GCF_000209935#EUR_RS04050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key