1 HAMP#1
181-249 aa · 69 aa · 14.3% of protein
Raw token
HAMP:181:0.0000707:249:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS07765
Histidine kinase, Classic
Agathobacter rectalis · GCF_018784725
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784725#GPK75_RS07765Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 483 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
254-320 aa · 67 aa · 13.9% of protein
Raw token
HisKA:254:0.000000000000666:320:67:643 HATPase_c#3
368-479 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:368:3.39e-28:479:112:109- Raw architecture: HAMP:181:0.0000707:249:72:69#HisKA:254:0.000000000000666:320:67:64#HATPase_c:368:3.39e-28:479:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784725::NZ_WQOP01000025.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87425-89590Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_07615RefSeq proteinWP_306778910.1
Context group ID
GCF_018784725::NZ_WQOP01000025.1::G00026Context members
GPK75_RS07765GPK75_RS07770
Partner locus tags
GPK75_RS07765GPK75_RS07770
Partner old locus tags
GPK75_07615GPK75_07620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306778910.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS07765Primary locus identifier stored in the genes table.
Old locus tagGPK75_07615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000025.1Sequence record reported by the local genomic context database.
Genomic interval87 425-88 876 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 425-89 590 ntGCF_018784725::NZ_WQOP01000025.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000025.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000025.1All displayed genes belong to this local TCS context.
Neighborhood span87 425-89 590 nt2 166 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 425 nt89 590 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK75_RS07765GCF_018784725#GPK75_RS07765
HKClassicCurrent focus
87 425-88 876 nt · Reverse (-)
GPK75_RS07770GCF_018784725#GPK75_RS07770
RROmpR
88 898-89 590 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784725#GPK75_RS07765The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1597723
Simplified PFAM architecture for HKOC_1597723
PFAM domain coverage: 179 / 483 aa (37.1%)
1 aa483 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[254-320] | HATPase_c[368-479]
- Domain count: 2
- Matched identifier: HKOC_1597723
- Positioned domains: HisKA 254-320 ; HATPase_c 368-479
Cluster members and taxonomy
Representative gene: GCF_018784725#GPK75_RS07765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key