1 Response_reg#1
5-117 aa · 113 aa · 52.8% of protein
Raw token
Response_reg:5:4.8e-36:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS06370
Response regulator NarL family
Agathobacter rectalis · GCF_018784725
ClassRRTypeNarLLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784725#GPK75_RS06370Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 214 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-205 aa · 57 aa · 26.6% of protein
Raw token
HTH_LUXR:149:7.39e-23:205:57:58- Raw architecture: Response_reg:5:4.8e-36:117:113:111#HTH_LUXR:149:7.39e-23:205:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784725::NZ_WQOP01000018.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14728-16419Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_06210RefSeq proteinWP_306778830.1
Context group ID
GCF_018784725::NZ_WQOP01000018.1::G00016Context members
GPK75_RS06370GPK75_RS06375
Partner locus tags
GPK75_RS06370GPK75_RS06375
Partner old locus tags
GPK75_06210GPK75_06215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306778830.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS06370Primary locus identifier stored in the genes table.
Old locus tagGPK75_06210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000018.1Sequence record reported by the local genomic context database.
Genomic interval14 728-15 372 nt645 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 728-16 419 ntGCF_018784725::NZ_WQOP01000018.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000018.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000018.1All displayed genes belong to this local TCS context.
Neighborhood span14 728-16 419 nt1 692 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 728 nt16 419 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK75_RS06370GCF_018784725#GPK75_RS06370
RRNarLCurrent focus
14 728-15 372 nt · Reverse (-)
GPK75_RS06375GCF_018784725#GPK75_RS06375
HKClassic
15 376-16 419 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784725#GPK75_RS06370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1947013
Simplified PFAM architecture for RROC_1947013
PFAM domain coverage: 168 / 214 aa (78.5%)
1 aa214 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1947013
- Positioned domains: Response_reg 5-116 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_018784725#GPK75_RS06370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key