1 HisKA#1
85-146 aa · 62 aa · 20.8% of protein
Raw token
HisKA:85:0.0000000000182:146:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS03850
Histidine kinase, Classic
Agathobacter rectalis · GCF_018784725
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784725#GPK75_RS03850Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 298 aa (55.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-298 aa · 102 aa · 34.2% of protein
Raw token
HATPase_c:197:8.19e-29:298:102:109- Raw architecture: HisKA:85:0.0000000000182:146:62:64#HATPase_c:197:8.19e-29:298:102:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784725::NZ_WQOP01000007.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6227-7803Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_03765RefSeq proteinWP_147599776.1
Context group ID
GCF_018784725::NZ_WQOP01000007.1::G00050Context members
GPK75_RS03850GPK75_RS03855
Partner locus tags
GPK75_RS03850GPK75_RS03855
Partner old locus tags
GPK75_03765GPK75_03770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147599776.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS03850Primary locus identifier stored in the genes table.
Old locus tagGPK75_03765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000007.1Sequence record reported by the local genomic context database.
Genomic interval6 227-7 123 nt897 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 227-7 803 ntGCF_018784725::NZ_WQOP01000007.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000007.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000007.1All displayed genes belong to this local TCS context.
Neighborhood span6 227-7 803 nt1 577 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 227 nt7 803 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK75_RS03850GCF_018784725#GPK75_RS03850
HKClassicCurrent focus
6 227-7 123 nt · Reverse (-)
GPK75_RS03855GCF_018784725#GPK75_RS03855
RROmpR
7 120-7 803 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784725#GPK75_RS03850The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2889202
Simplified PFAM architecture for HKOC_2889202
PFAM domain coverage: 165 / 298 aa (55.4%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-146] | HATPase_c[195-297]
- Domain count: 2
- Matched identifier: HKOC_2889202
- Positioned domains: HisKA 85-146 ; HATPase_c 195-297
Cluster members and taxonomy
Representative gene: GCF_018784725#GPK75_RS03850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key