1 Response_reg#1
4-112 aa · 109 aa · 46.0% of protein
Raw token
Response_reg:4:0.00000000000588:112:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK75_RS03830
Response regulator LytTR family
Agathobacter rectalis · GCF_018784725
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784725#GPK75_RS03830Stable P2CS identifier used across views.
GenomeGCF_018784725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 237 aa (84.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-233 aa · 91 aa · 38.4% of protein
Raw token
LytTR:143:0.0000000000000942:233:96:98- Raw architecture: Response_reg:4:0.00000000000588:112:114:111#LytTR:143:0.0000000000000942:233:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784725::NZ_WQOP01000007.1::G00049
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1406-2119Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK75_03745RefSeq proteinWP_178832551.1
Context group ID
GCF_018784725::NZ_WQOP01000007.1::G00049Context members
GPK75_RS03830
Partner locus tags
GPK75_RS03830
Partner old locus tags
GPK75_03745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_178832551.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK75_RS03830Primary locus identifier stored in the genes table.
Old locus tagGPK75_03745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOP01000007.1Sequence record reported by the local genomic context database.
Genomic interval1 406-2 119 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 406-2 119 ntGCF_018784725::NZ_WQOP01000007.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784725::NZ_WQOP01000007.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOP01000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 406-2 119 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 406 nt2 119 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK75_RS03830GCF_018784725#GPK75_RS03830
RRLytTRCurrent focus
1 406-2 119 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784725#GPK75_RS03830The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0974640
Simplified PFAM architecture for RROC_0974640
PFAM domain coverage: 200 / 237 aa (84.4%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-114] | LytTR[144-232]
- Domain count: 2
- Matched identifier: RROC_0974640
- Positioned domains: Response_reg 4-114 ; LytTR 144-232
Cluster members and taxonomy
Representative gene: GCF_018784725#GPK75_RS03830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_018784725
AssemblyASM1878472v1 · Scaffoldhaploid
Genome composition3 710 246 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 87 · HK 35 · RR 50CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key