1 Response_reg#1
4-115 aa · 112 aa · 21.3% of protein
Raw token
Response_reg:4:6.52e-24:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS11180
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_018784465
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784465#GPK70_RS11180Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 527 aa (28.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
489-525 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:489:0.00000000115:525:37:42- Raw architecture: Response_reg:4:6.52e-24:115:112:111#HTH_AraC:489:0.00000000115:525:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784465::NZ_WQOI01000094.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span814-2397Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_11150RefSeq proteinWP_215663967.1
Context group ID
GCF_018784465::NZ_WQOI01000094.1::G00001Context members
GPK70_RS11180
Partner locus tags
GPK70_RS11180
Partner old locus tags
GPK70_11150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215663967.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS11180Primary locus identifier stored in the genes table.
Old locus tagGPK70_11150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000094.1Sequence record reported by the local genomic context database.
Genomic interval814-2 397 nt1 584 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span814-2 397 ntGCF_018784465::NZ_WQOI01000094.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000094.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000094.1All displayed genes belong to this local TCS context.
Neighborhood span814-2 397 nt1 584 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
814 nt2 397 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK70_RS11180GCF_018784465#GPK70_RS11180
RRunclassifiedCurrent focus
814-2 397 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784465#GPK70_RS11180The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116600
Simplified PFAM architecture for RROC_0116600
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[447-525]
- Domain count: 2
- Matched identifier: RROC_0116600
- Positioned domains: Response_reg 4-115 ; HTH_18 447-525
Cluster members and taxonomy
Representative gene: GCF_018784465#GPK70_RS11180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key