1 PAS_3#1
168-256 aa · 89 aa · 8.3% of protein
Raw token
PAS_3:168:3.58e-21:256:89:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS10550
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_018784465
ClassHKTypeHybridLength1068 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784465#GPK70_RS10550Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1068 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage505 / 1068 aa (47.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1068 aa
Domain-by-domain annotation5 items
2 HisKA#2
558-624 aa · 67 aa · 6.3% of protein
Raw token
HisKA:558:3.09e-16:624:67:643 HATPase_c#3
671-785 aa · 115 aa · 10.8% of protein
Raw token
HATPase_c:671:6.02e-31:785:115:1094 Response_reg#4
805-921 aa · 117 aa · 11.0% of protein
Raw token
Response_reg:805:4.47e-20:921:117:1115 Response_reg#5
949-1065 aa · 117 aa · 11.0% of protein
Raw token
Response_reg:949:3.47e-30:1065:117:111- Raw architecture: PAS_3:168:3.58e-21:256:89:89#HisKA:558:3.09e-16:624:67:64#HATPase_c:671:6.02e-31:785:115:109#Response_reg:805:4.47e-20:921:117:111#Response_reg:949:3.47e-30:1065:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784465::NZ_WQOI01000088.1::G00044
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span16925-20131Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_10535RefSeq proteinWP_215663875.1
Context group ID
GCF_018784465::NZ_WQOI01000088.1::G00044Context members
GPK70_RS10550
Partner locus tags
GPK70_RS10550
Partner old locus tags
GPK70_10535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215663875.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS10550Primary locus identifier stored in the genes table.
Old locus tagGPK70_10535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000088.1Sequence record reported by the local genomic context database.
Genomic interval16 925-20 131 nt3 207 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 925-20 131 ntGCF_018784465::NZ_WQOI01000088.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000088.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000088.1All displayed genes belong to this local TCS context.
Neighborhood span16 925-20 131 nt3 207 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 925 nt20 131 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK70_RS10550GCF_018784465#GPK70_RS10550
HKHybridCurrent focus
16 925-20 131 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784465#GPK70_RS10550The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0247940
Simplified PFAM architecture for HKOC_0247940
PFAM domain coverage: 506 / 1068 aa (47.4%)
1 aa1068 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[167-256] | HisKA[558-624] | HATPase_c[671-787] | Response_reg[805-920] | Response_reg[949-1064]
- Domain count: 5
- Matched identifier: HKOC_0247940
- Positioned domains: PAS_3 167-256 ; HisKA 558-624 ; HATPase_c 671-787 ; Response_reg 805-920 ; Response_reg 949-1064
Cluster members and taxonomy
Representative gene: GCF_018784465#GPK70_RS10550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key