1 HAMP#1
159-228 aa · 70 aa · 14.9% of protein
Raw token
HAMP:159:0.00000000025:228:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS09015
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_018784465
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784465#GPK70_RS09015Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 470 aa (52.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
253-319 aa · 67 aa · 14.3% of protein
Raw token
HisKA:253:0.000000000156:319:67:643 HATPase_c#3
363-470 aa · 108 aa · 23.0% of protein
Raw token
HATPase_c:363:2.84e-25:470:109:109- Raw architecture: HAMP:159:0.00000000025:228:70:69#HisKA:253:0.000000000156:319:67:64#HATPase_c:363:2.84e-25:470:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784465::NZ_WQOI01000074.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11240-13307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_09010RefSeq proteinWP_195522533.1
Context group ID
GCF_018784465::NZ_WQOI01000074.1::G00037Context members
GPK70_RS09010GPK70_RS09015
Partner locus tags
GPK70_RS09010GPK70_RS09015
Partner old locus tags
GPK70_09005GPK70_09010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195522533.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS09015Primary locus identifier stored in the genes table.
Old locus tagGPK70_09010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000074.1Sequence record reported by the local genomic context database.
Genomic interval11 895-13 307 nt1 413 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 240-13 307 ntGCF_018784465::NZ_WQOI01000074.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000074.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000074.1All displayed genes belong to this local TCS context.
Neighborhood span11 240-13 307 nt2 068 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 240 nt13 307 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK70_RS09010GCF_018784465#GPK70_RS09010
RROmpR
11 240-11 911 nt · Forward (+)
GPK70_RS09015GCF_018784465#GPK70_RS09015
HKClassicCurrent focus
11 895-13 307 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015555785#I2G12_RS07315Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1721052
Simplified PFAM architecture for HKOC_1721052
PFAM domain coverage: 171 / 470 aa (36.4%)
1 aa470 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[253-318] | HATPase_c[365-469]
- Domain count: 2
- Matched identifier: HKOC_1721052
- Positioned domains: HisKA 253-318 ; HATPase_c 365-469
Cluster members and taxonomy
Representative gene: GCF_015555785#I2G12_RS07315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key