1 HisKA#1
355-419 aa · 65 aa · 11.1% of protein
Raw token
HisKA:355:0.00000000000017:419:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS07360
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_018784465
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784465#GPK70_RS07360Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 586 aa (29.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
465-573 aa · 109 aa · 18.6% of protein
Raw token
HATPase_c:465:0.00000000000264:573:113:109- Raw architecture: HisKA:355:0.00000000000017:419:65:64#HATPase_c:465:0.00000000000264:573:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784465::NZ_WQOI01000056.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55506-57945Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_07350RefSeq proteinWP_215663401.1
Context group ID
GCF_018784465::NZ_WQOI01000056.1::G00033Context members
GPK70_RS07360GPK70_RS07365
Partner locus tags
GPK70_RS07360GPK70_RS07365
Partner old locus tags
GPK70_07350GPK70_07355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215663401.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS07360Primary locus identifier stored in the genes table.
Old locus tagGPK70_07350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000056.1Sequence record reported by the local genomic context database.
Genomic interval55 506-57 266 nt1 761 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 506-57 945 ntGCF_018784465::NZ_WQOI01000056.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000056.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000056.1All displayed genes belong to this local TCS context.
Neighborhood span55 506-57 945 nt2 440 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 506 nt57 945 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK70_RS07360GCF_018784465#GPK70_RS07360
HKClassicCurrent focus
55 506-57 266 nt · Reverse (-)
GPK70_RS07365GCF_018784465#GPK70_RS07365
RROmpR
57 232-57 945 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784465#GPK70_RS07360The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1133553
Simplified PFAM architecture for HKOC_1133553
PFAM domain coverage: 171 / 586 aa (29.2%)
1 aa586 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-419] | HATPase_c[465-571]
- Domain count: 2
- Matched identifier: HKOC_1133553
- Positioned domains: HisKA 356-419 ; HATPase_c 465-571
Cluster members and taxonomy
Representative gene: GCF_018784465#GPK70_RS07360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key