1 HisKA#1
239-305 aa · 67 aa · 10.9% of protein
Raw token
HisKA:239:6.86e-18:305:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS05680
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_018784465
ClassHKTypeHybridLength614 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784465#GPK70_RS05680Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length614 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage293 / 614 aa (47.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa614 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
358-469 aa · 112 aa · 18.2% of protein
Raw token
HATPase_c:358:4.35e-29:469:112:1093 Response_reg#3
494-607 aa · 114 aa · 18.6% of protein
Raw token
Response_reg:494:1.08e-28:607:114:111- Raw architecture: HisKA:239:6.86e-18:305:67:64#HATPase_c:358:4.35e-29:469:112:109#Response_reg:494:1.08e-28:607:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784465::NZ_WQOI01000043.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span140-1984Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_05670RefSeq proteinWP_252249777.1
Context group ID
GCF_018784465::NZ_WQOI01000043.1::G00028Context members
GPK70_RS05680
Partner locus tags
GPK70_RS05680
Partner old locus tags
GPK70_05670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_252249777.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS05680Primary locus identifier stored in the genes table.
Old locus tagGPK70_05670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000043.1Sequence record reported by the local genomic context database.
Genomic interval140-1 984 nt1 845 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span140-1 984 ntGCF_018784465::NZ_WQOI01000043.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000043.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000043.1All displayed genes belong to this local TCS context.
Neighborhood span140-1 984 nt1 845 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 nt1 984 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK70_RS05680GCF_018784465#GPK70_RS05680
HKHybridCurrent focus
140-1 984 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784465#GPK70_RS05680The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0992453
Simplified PFAM architecture for HKOC_0992453
PFAM domain coverage: 295 / 614 aa (48.0%)
1 aa614 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[239-304] | HATPase_c[355-468] | Response_reg[494-608]
- Domain count: 3
- Matched identifier: HKOC_0992453
- Positioned domains: HisKA 239-304 ; HATPase_c 355-468 ; Response_reg 494-608
Cluster members and taxonomy
Representative gene: GCF_018784465#GPK70_RS05680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key