1 HisKA#1
434-501 aa · 68 aa · 10.3% of protein
Raw token
HisKA:434:0.000000000000945:501:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS04855
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_018784465
ClassHKTypeClassicLength662 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784465#GPK70_RS04855Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length662 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 662 aa (27.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa662 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
545-657 aa · 113 aa · 17.1% of protein
Raw token
HATPase_c:545:4.23e-30:657:113:109- Raw architecture: HisKA:434:0.000000000000945:501:68:64#HATPase_c:545:4.23e-30:657:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784465::NZ_WQOI01000036.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span51686-53674Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_04840RefSeq proteinWP_330619851.1
Context group ID
GCF_018784465::NZ_WQOI01000036.1::G00027Context members
GPK70_RS04855
Partner locus tags
GPK70_RS04855
Partner old locus tags
GPK70_04840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330619851.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS04855Primary locus identifier stored in the genes table.
Old locus tagGPK70_04840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000036.1Sequence record reported by the local genomic context database.
Genomic interval51 686-53 674 nt1 989 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 686-53 674 ntGCF_018784465::NZ_WQOI01000036.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000036.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000036.1All displayed genes belong to this local TCS context.
Neighborhood span51 686-53 674 nt1 989 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 686 nt53 674 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK70_RS04855GCF_018784465#GPK70_RS04855
HKClassicCurrent focus
51 686-53 674 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784465#GPK70_RS04855The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0868445
Simplified PFAM architecture for HKOC_0868445
PFAM domain coverage: 285 / 662 aa (43.1%)
1 aa662 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[163-269] | HisKA[435-501] | HATPase_c[546-656]
- Domain count: 3
- Matched identifier: HKOC_0868445
- Positioned domains: DUF4118 163-269 ; HisKA 435-501 ; HATPase_c 546-656
Cluster members and taxonomy
Representative gene: GCF_018784465#GPK70_RS04855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key