1 HisKA#1
645-710 aa · 66 aa · 7.4% of protein
Raw token
HisKA:645:0.00000000000000231:710:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS01950
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_018784465
ClassHKTypeClassicLength894 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018784465#GPK70_RS01950Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length894 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 894 aa (19.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa894 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
756-863 aa · 108 aa · 12.1% of protein
Raw token
HATPase_c:756:0.000000000046:863:113:109- Raw architecture: HisKA:645:0.00000000000000231:710:66:64#HATPase_c:756:0.000000000046:863:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018784465::NZ_WQOI01000019.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23435-26860Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_01935RefSeq proteinWP_330619829.1
Context group ID
GCF_018784465::NZ_WQOI01000019.1::G00018Context members
GPK70_RS01945GPK70_RS01950
Partner locus tags
GPK70_RS01945GPK70_RS01950
Partner old locus tags
GPK70_01930GPK70_01935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330619829.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS01950Primary locus identifier stored in the genes table.
Old locus tagGPK70_01935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000019.1Sequence record reported by the local genomic context database.
Genomic interval24 176-26 860 nt2 685 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 435-26 860 ntGCF_018784465::NZ_WQOI01000019.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000019.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000019.1All displayed genes belong to this local TCS context.
Neighborhood span23 435-26 860 nt3 426 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 435 nt26 860 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GPK70_RS01945GCF_018784465#GPK70_RS01945
RROmpR
23 435-24 130 nt · Forward (+)
GPK70_RS01950GCF_018784465#GPK70_RS01950
HKClassicCurrent focus
24 176-26 860 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784465#GPK70_RS01950The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0422193
Simplified PFAM architecture for HKOC_0422193
PFAM domain coverage: 158 / 894 aa (17.7%)
1 aa894 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[645-710] | HATPase_c[757-848]
- Domain count: 2
- Matched identifier: HKOC_0422193
- Positioned domains: HisKA 645-710 ; HATPase_c 757-848
Cluster members and taxonomy
Representative gene: GCF_018784465#GPK70_RS01950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key