1 HisKA#1
19-71 aa · 53 aa · 23.3% of protein
Raw token
HisKA:19:0.000000613:71:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS00725
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_018784465
ClassHKTypeClassicLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784465#GPK70_RS00725Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 227 aa (69.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
123-226 aa · 104 aa · 45.8% of protein
Raw token
HATPase_c:123:6.05e-37:226:107:109- Raw architecture: HisKA:19:0.000000613:71:53:64#HATPase_c:123:6.05e-37:226:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784465::NZ_WQOI01000004.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1931-2614Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_00720RefSeq proteinWP_055219129.1
Context group ID
GCF_018784465::NZ_WQOI01000004.1::G00029Context members
GPK70_RS00725
Partner locus tags
GPK70_RS00725
Partner old locus tags
GPK70_00720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055219129.1Primary protein accession used for annex mappings.
UniProt accessionA0A174APS6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174APS6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS00725Primary locus identifier stored in the genes table.
Old locus tagGPK70_00720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000004.1Sequence record reported by the local genomic context database.
Genomic interval1 931-2 614 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 931-2 614 ntGCF_018784465::NZ_WQOI01000004.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000004.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 931-2 614 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 931 nt2 614 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK70_RS00725GCF_018784465#GPK70_RS00725
HKClassicCurrent focus
1 931-2 614 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS04210Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2926756
Simplified PFAM architecture for HKOC_2926756
PFAM domain coverage: 104 / 227 aa (45.8%)
1 aa227 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[123-226]
- Domain count: 1
- Matched identifier: HKOC_2926756
- Positioned domains: HATPase_c 123-226
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS04210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key