1 Response_reg#1
1-99 aa · 99 aa · 97.1% of protein
Raw token
Response_reg:1:1.56e-23:99:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GPK70_RS00310
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_018784465
ClassRRTypeCheYLength102 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018784465#GPK70_RS00310Stable P2CS identifier used across views.
GenomeGCF_018784465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length102 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage99 / 102 aa (97.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa102 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:1.56e-23:99:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018784465::NZ_WQOI01000002.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9255-9563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGPK70_00310RefSeq proteinWP_082424717.1
Context group ID
GCF_018784465::NZ_WQOI01000002.1::G00022Context members
GPK70_RS00310
Partner locus tags
GPK70_RS00310
Partner old locus tags
GPK70_00310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_082424717.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGPK70_RS00310Primary locus identifier stored in the genes table.
Old locus tagGPK70_00310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQOI01000002.1Sequence record reported by the local genomic context database.
Genomic interval9 255-9 563 nt309 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 255-9 563 ntGCF_018784465::NZ_WQOI01000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018784465::NZ_WQOI01000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQOI01000002.1All displayed genes belong to this local TCS context.
Neighborhood span9 255-9 563 nt309 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 255 nt9 563 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GPK70_RS00310GCF_018784465#GPK70_RS00310
RRCheYCurrent focus
9 255-9 563 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480245#DW915_RS12010Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2471248
Simplified PFAM architecture for RROC_2471248
PFAM domain coverage: 98 / 102 aa (96.1%)
1 aa102 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-99]
- Domain count: 1
- Matched identifier: RROC_2471248
- Positioned domains: Response_reg 2-99 ; Response_reg 2-99
Cluster members and taxonomy
Representative gene: GCF_003480245#DW915_RS12010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_018784465
AssemblyASM1878446v1 · Scaffoldhaploid
Genome composition3 165 398 bp · 48,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 68 · HK 31 · RR 35CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key