1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:5.66e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW36_RS01635
Response regulator OmpR family
Bacillus mycoides · GCF_018751995
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018751995#EXW36_RS01635Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:155:1.19e-34:230:76:77- Raw architecture: Response_reg:6:5.66e-36:115:111:111#Trans_reg_C:155:1.19e-34:230:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018751995::NZ_CP071811.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span295517-297233Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW36_01635RefSeq proteinWP_016126483.1
Context group ID
GCF_018751995::NZ_CP071811.1::G00003Context members
EXW36_RS01630EXW36_RS01635
Partner locus tags
EXW36_RS01630EXW36_RS01635
Partner old locus tags
EXW36_01630EXW36_01635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016126483.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW36_RS01635Primary locus identifier stored in the genes table.
Old locus tagEXW36_01635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071811.1Sequence record reported by the local genomic context database.
Genomic interval296 520-297 233 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span295 517-297 233 ntGCF_018751995::NZ_CP071811.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018751995::NZ_CP071811.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071811.1All displayed genes belong to this local TCS context.
Neighborhood span295 517-297 233 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
295 517 nt297 233 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW36_RS01630GCF_018751995#EXW36_RS01630
HKClassic
295 517-296 530 nt · Reverse (-)
EXW36_RS01635GCF_018751995#EXW36_RS01635
RROmpRCurrent focus
296 520-297 233 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS01010Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962660
Simplified PFAM architecture for RROC_0962660
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_0962660
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS01010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018751995
AssemblyASM1875199v1 · Complete Genomehaploid
Genome composition6 010 975 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 67 · RR 59CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key