1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:4.97e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EXW42_RS05100
Response regulator OmpR family
Bacillus mycoides · GCF_018742265
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018742265#EXW42_RS05100Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:154:9.14e-36:229:76:77- Raw architecture: Response_reg:6:4.97e-35:115:111:111#Trans_reg_C:154:9.14e-36:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018742265::NZ_CP036137.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span954621-956811Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEXW42_05205RefSeq proteinWP_002187503.1
Context group ID
GCF_018742265::NZ_CP036137.1::G00015Context members
EXW42_RS05100EXW42_RS05105
Partner locus tags
EXW42_RS05100EXW42_RS05105
Partner old locus tags
EXW42_05205EXW42_05210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002187503.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7W414Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7W414_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEXW42_RS05100Primary locus identifier stored in the genes table.
Old locus tagEXW42_05205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP036137.1Sequence record reported by the local genomic context database.
Genomic interval954 621-955 322 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span954 621-956 811 ntGCF_018742265::NZ_CP036137.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018742265::NZ_CP036137.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP036137.1All displayed genes belong to this local TCS context.
Neighborhood span954 621-956 811 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
954 621 nt956 811 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EXW42_RS05100GCF_018742265#EXW42_RS05100
RROmpRCurrent focus
954 621-955 322 nt · Forward (+)
EXW42_RS05105GCF_018742265#EXW42_RS05105
HKClassic
955 306-956 811 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS26995Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081717
Simplified PFAM architecture for RROC_1081717
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1081717
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS26995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_018742265
AssemblyASM1874226v1 · Complete Genomehaploid
Genome composition5 835 815 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 134 · HK 72 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key